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Virus Family: Geminiviridae Category: Virus-host interactions Title: Characterization of a recovery stage in geminivirus infected plants: Correlation between viral DNA levels, DNA methylation and siRNA types. Authors: E. A RODRIGUEZ-NEGRETE, J. CARRILLO-TRIPP, AND R.F. RIVERABUSTAMANTE Address: Departamento de Ingeniería Genética, Cinvestav Irapuato, Km. 9.6 Libramiento Norte, P.O. Box 629, C.P. 36500, Irapuato, Guanajuato, México. Abstract: Pepper golden mosaic virus (PepGMV) is an important begomovirus distributed in Mexico and Central America in many solanaceous crops. We recently showed that PepGMV-infected pepper plants consistently showed symptom remission, after an initial development of the characteristic symptoms. The remission or host recovery was correlated with a specific resistance to PepGMV found in the new asymptomatic tissue as well as a dramatic decrease in the concentration of viral DNA and RNA. Similarly, the presence of virus-related small interfering RNAs (siRNAs) suggested the involvement of a post-transcriptional gene silencing (PTGS) mechanism in the process of recovery. A further characterization of the siRNA population along the process from the highly symptomatic leaves to the asymptomatic, newly-developed tissue, revealed changes in the ratio of the two main types of siRNA molecules detected (21 and 24 nt long). Interestingly, the two types of siRNA molecules seemed to be related to different regions in the viral genome. In addition, these changes also showed some correlation with the methylation level of viral DNA found in the different tissues along the recovery process.